# CTIMS

## CTIMS

- [Welcome to CTIMS](https://pughlab.gitbook.io/ctims/welcome-to-ctims.md): Clinical Trials Integrated Match System (CTIMS)
- [CTIMS User Manual](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual.md): Improve efficiencies. Accelerate cancer research. Match patients to clinical trials.
- [Security & User Management](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/security-and-user-management.md)
- [CTIMS Sign In](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/ctims-sign-in.md)
- [CTIMS Editor](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/ctims-editor.md): CTIMS Editor enables abstraction of matching criteria into a standardized, machine-readable file: Clinical Trial Markup Language (CTML)
- [Trials and Trial Groups](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/ctims-editor/trials-and-trial-groups.md)
- [User Homepage](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/ctims-editor/user-homepage.md): CTIMS trials tab overview with definitions and details
- [CTML Glossary](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/ctims-editor/ctml-glossary.md): This page provides definitions and expected values in the CTML fields
- [CTML Abstraction/Creation](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/ctims-editor/ctml-abstraction-creation.md)
- [Resources](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/ctims-editor/ctml-abstraction-creation/resources.md)
- [CTIMS Results Tab](https://pughlab.gitbook.io/ctims/user-manual/ctims-user-manual/ctims-editor/ctims-results-tab.md)
- [Architecture](https://pughlab.gitbook.io/ctims/deployment-steps/architecture.md): Architecture of CTIMS
- [Keycloak Setup](https://pughlab.gitbook.io/ctims/deployment-steps/keycloak-setup.md)
- [Running Keycloak with Docker (optional)](https://pughlab.gitbook.io/ctims/deployment-steps/keycloak-setup/running-keycloak-with-docker-optional.md)
- [Keycloak authentication setup](https://pughlab.gitbook.io/ctims/deployment-steps/keycloak-setup/keycloak-authentication-setup.md)
- [Keycloak client CTIMS role setup](https://pughlab.gitbook.io/ctims/deployment-steps/keycloak-setup/keycloak-client-ctims-role-setup.md)
- [Keycloak User creation](https://pughlab.gitbook.io/ctims/deployment-steps/keycloak-setup/keycloak-user-creation.md)
- [Keycloak User - Roles assignment](https://pughlab.gitbook.io/ctims/deployment-steps/keycloak-setup/keycloak-user-roles-assignment.md)
- [CTIMS Environment variables](https://pughlab.gitbook.io/ctims/ctims-environment-variables.md): CTIMS depends on many environment variable for its configuration. They are stored in the .env file. The same .env file is used for both frontend and backend containers
- [Running CTIMS with docker](https://pughlab.gitbook.io/ctims/running-ctims-with-docker.md)
- [Running CTIMS Application without Docker](https://pughlab.gitbook.io/ctims/running-ctims-application-without-docker.md)